J5_7SYW_004

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

32 nucleotides

Bulged bases

7SYW|1|2|G|126, 7SYW|1|2|C|127, 7SYW|1|2|U|305, 7SYW|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|G|123
7SYW|1|2|U|124
7SYW|1|2|C|125
7SYW|1|2|G|126
7SYW|1|2|C|127
7SYW|1|2|U|128
7SYW|1|2|C|129
*
7SYW|1|2|G|183
7SYW|1|2|G|184
7SYW|1|2|G|185
*
7SYW|1|2|U|214
7SYW|1|2|G|215
7SYW|1|2|C|216
7SYW|1|2|A|217
7SYW|1|2|U|218
7SYW|1|2|U|219
*
7SYW|1|2|A|302
7SYW|1|2|C|303
7SYW|1|2|C|304
7SYW|1|2|U|305
7SYW|1|2|C|306
7SYW|1|2|G|307
7SYW|1|2|G|308
7SYW|1|2|G|309
7SYW|1|2|C|310
7SYW|1|2|C|311
7SYW|1|2|G|312
*
7SYW|1|2|C|337
7SYW|1|2|G|338
7SYW|1|2|A|339
7SYW|1|2|C|340
7SYW|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8