J5_7SYX_002

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|C|30
7SYX|1|2|U|31
7SYX|1|2|U|32
7SYX|1|2|G|33
7SYX|1|2|U|34
*
7SYX|1|2|A|521
7SYX|1|2|A|522
7SYX|1|2|A|523
7SYX|1|2|U|524
7SYX|1|2|A|525
7SYX|1|2|A|526
7SYX|1|2|C|527
*
7SYX|1|2|G|558
7SYX|1|2|G|559
7SYX|1|2|A|560
7SYX|1|2|A|561
7SYX|1|2|U|562
7SYX|1|2|G|563
7SYX|1|2|A|564
7SYX|1|2|G|565
*
7SYX|1|2|C|585
7SYX|1|2|G|586
7SYX|1|2|A|587
7SYX|1|2|G|588
7SYX|1|2|G|589
7SYX|1|2|A|590
7SYX|1|2|U|591
7SYX|1|2|C|592
7SYX|1|2|C|593
7SYX|1|2|A|594
7SYX|1|2|U|595
*
7SYX|1|2|A|641
7SYX|1|2|U|642
7SYX|1|2|A|643
7SYX|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30

Chain x

Eukaryotic translation initiation factor 5B