J5_7SYX_004

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCGCUC*GGG*UGC*GCCG*CGACC

Length

22 nucleotides

Bulged bases

7SYX|1|2|G|126, 7SYX|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|G|123
7SYX|1|2|U|124
7SYX|1|2|C|125
7SYX|1|2|G|126
7SYX|1|2|C|127
7SYX|1|2|U|128
7SYX|1|2|C|129
*
7SYX|1|2|G|183
7SYX|1|2|G|184
7SYX|1|2|G|185
*
7SYX|1|2|U|214
7SYX|1|2|G|215
7SYX|1|2|C|216
*
7SYX|1|2|G|309
7SYX|1|2|C|310
7SYX|1|2|C|311
7SYX|1|2|G|312
*
7SYX|1|2|C|337
7SYX|1|2|G|338
7SYX|1|2|A|339
7SYX|1|2|C|340
7SYX|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8