J5_7TOO_001
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7TOO|1|A58S|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOO_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0631
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOO|1|A25S|A|20
7TOO|1|A25S|G|21
7TOO|1|A25S|G|22
*
7TOO|1|A58S|C|35
7TOO|1|A58S|G|36
7TOO|1|A58S|A|37
7TOO|1|A58S|U|38
7TOO|1|A58S|G|39
7TOO|1|A58S|A|40
7TOO|1|A58S|A|41
7TOO|1|A58S|G|42
*
7TOO|1|A58S|U|102
7TOO|1|A58S|G|103
7TOO|1|A58S|A|104
7TOO|1|A58S|A|105
7TOO|1|A58S|C|106
7TOO|1|A58S|G|107
*
7TOO|1|A58S|C|115
7TOO|1|A58S|G|116
*
7TOO|1|A58S|C|137
7TOO|1|A58S|A|138
7TOO|1|A58S|U|139
Current chains
- Chain A25S
- 25S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL25
- 60S ribosomal protein L25
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL37
- 60S ribosomal protein L37-A
- Chain AL39
- 60S ribosomal protein L39
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