J5_7TOO_004
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7TOO|1|A25S|G|2116, 7TOO|1|A25S|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOO_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0831
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7TOO|1|A25S|G|1906
7TOO|1|A25S|C|1907
7TOO|1|A25S|A|1908
7TOO|1|A25S|A|1909
7TOO|1|A25S|A|1910
7TOO|1|A25S|A|1911
7TOO|1|A25S|U|1912
7TOO|1|A25S|A|1913
7TOO|1|A25S|G|1914
*
7TOO|1|A25S|U|1938
7TOO|1|A25S|G|1939
*
7TOO|1|A25S|U|2109
7TOO|1|A25S|G|2110
*
7TOO|1|A25S|C|2114
7TOO|1|A25S|G|2115
7TOO|1|A25S|G|2116
7TOO|1|A25S|A|2117
7TOO|1|A25S|C|2118
7TOO|1|A25S|A|2119
7TOO|1|A25S|A|2120
7TOO|1|A25S|G|2121
7TOO|1|A25S|G|2122
*
7TOO|1|A25S|C|2331
7TOO|1|A25S|A|2332
7TOO|1|A25S|C|2333
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL03
- RPL3 isoform 1
- Chain AL19
- 60S ribosomal protein L19-A
- Chain AL23
- 60S ribosomal protein L23-A
- Chain AL24
- RPL24A isoform 1
Coloring options: