J5_7TOO_006

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

7TOO|1|A25S|G|2418, 7TOO|1|A25S|A|2799, 7TOO|1|A25S|G|2800, 7TOO|1|A25S|A|2801, 7TOO|1|A25S|A|2802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TOO_006 not in the Motif Atlas

Homologous match to J5_8P9A_015

Geometric discrepancy: 0.0822

The information below is about J5_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08912.1

Basepair signature

cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7TOO|1|A25S|U|2416
7TOO|1|A25S|U|2417
7TOO|1|A25S|G|2418
7TOO|1|A25S|A|2419
*
7TOO|1|A25S|U|2611
7TOO|1|A25S|U|2612
7TOO|1|A25S|U|2613
7TOO|1|A25S|G|2614
*
7TOO|1|A25S|C|2627
7TOO|1|A25S|A|2628
*
7TOO|1|A25S|U|2650
7TOO|1|A25S|G|2651
*
7TOO|1|A25S|C|2798
7TOO|1|A25S|A|2799
7TOO|1|A25S|G|2800
7TOO|1|A25S|A|2801
7TOO|1|A25S|A|2802
7TOO|1|A25S|A|2803
7TOO|1|A25S|A|2804

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL15

60S ribosomal protein L15-A

Chain AL18

60S ribosomal protein L18-A

Chain AL21

60S ribosomal protein L21-A

Chain AL28

60S ribosomal protein L28

Chain AL29

RPL29 isoform 1

Chain AL42

60S ribosomal protein L42-A

Chain APTN

Transfer RNA; tRNA