3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
7TOP|1|A58S|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7TOP_001 not in the Motif Atlas
Homologous match to J5_8C3A_001
Geometric discrepancy: 0.0581
The information below is about J5_8C3A_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7TOP|1|A25S|A|20
7TOP|1|A25S|G|21
7TOP|1|A25S|G|22
*
7TOP|1|A58S|C|35
7TOP|1|A58S|G|36
7TOP|1|A58S|A|37
7TOP|1|A58S|U|38
7TOP|1|A58S|G|39
7TOP|1|A58S|A|40
7TOP|1|A58S|A|41
7TOP|1|A58S|G|42
*
7TOP|1|A58S|U|102
7TOP|1|A58S|G|103
7TOP|1|A58S|A|104
7TOP|1|A58S|A|105
7TOP|1|A58S|C|106
7TOP|1|A58S|G|107
*
7TOP|1|A58S|C|115
7TOP|1|A58S|G|116
*
7TOP|1|A58S|C|137
7TOP|1|A58S|A|138
7TOP|1|A58S|U|139

Current chains

Chain A25S
25S rRNA
Chain A58S
5.8S rRNA

Nearby chains

Chain AL15
60S ribosomal protein L15-A
Chain AL25
60S ribosomal protein L25
Chain AL35
60S ribosomal protein L35-A
Chain AL37
60S ribosomal protein L37-A
Chain AL39
60S ribosomal protein L39

Coloring options:


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