J5_7TOP_005
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|2404, 7TOP|1|A25S|A|2817, 7TOP|1|A25S|U|2873, 7TOP|1|A25S|G|2874, 7TOP|1|A25S|U|2978, 7TOP|1|A25S|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOP|1|A25S|A|2399
7TOP|1|A25S|G|2400
7TOP|1|A25S|A|2401
7TOP|1|A25S|A|2402
7TOP|1|A25S|G|2403
7TOP|1|A25S|A|2404
7TOP|1|A25S|C|2405
7TOP|1|A25S|C|2406
*
7TOP|1|A25S|G|2815
7TOP|1|A25S|G|2816
7TOP|1|A25S|A|2817
7TOP|1|A25S|U|2818
7TOP|1|A25S|A|2819
7TOP|1|A25S|A|2820
7TOP|1|A25S|C|2821
7TOP|1|A25S|U|2822
7TOP|1|A25S|G|2823
*
7TOP|1|A25S|C|2867
7TOP|1|A25S|U|2868
7TOP|1|A25S|U|2869
7TOP|1|A25S|C|2870
7TOP|1|A25S|G|2871
7TOP|1|A25S|A|2872
7TOP|1|A25S|U|2873
7TOP|1|A25S|G|2874
7TOP|1|A25S|U|2875
7TOP|1|A25S|C|2876
*
7TOP|1|A25S|G|2951
7TOP|1|A25S|G|2952
7TOP|1|A25S|U|2953
7TOP|1|A25S|U|2954
7TOP|1|A25S|U|2955
7TOP|1|A25S|A|2956
7TOP|1|A25S|G|2957
*
7TOP|1|A25S|U|2975
7TOP|1|A25S|A|2976
7TOP|1|A25S|G|2977
7TOP|1|A25S|U|2978
7TOP|1|A25S|U|2979
7TOP|1|A25S|U|2980
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL03
- RPL3 isoform 1
- Chain AL04
- RPL4A isoform 1
- Chain AL17
- 60S ribosomal protein L17-A
- Chain AL29
- RPL29 isoform 1
- Chain PR
- PR20
Coloring options: