J5_7TOR_004

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7TOR|1|A18S|G|126, 7TOR|1|A18S|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A18S|G|123
7TOR|1|A18S|U|124
7TOR|1|A18S|C|125
7TOR|1|A18S|G|126
7TOR|1|A18S|C|127
7TOR|1|A18S|U|128
7TOR|1|A18S|C|129
*
7TOR|1|A18S|G|183
7TOR|1|A18S|G|184
7TOR|1|A18S|G|185
*
7TOR|1|A18S|U|214
7TOR|1|A18S|G|215
*
7TOR|1|A18S|C|310
7TOR|1|A18S|C|311
7TOR|1|A18S|G|312
*
7TOR|1|A18S|C|337
7TOR|1|A18S|G|338
7TOR|1|A18S|A|339
7TOR|1|A18S|C|340
7TOR|1|A18S|C|341

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8