J5_7TOR_005
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 7TOR|1|A18S|C|687, 7TOR|1|A18S|U|688, 7TOR|1|A18S|U|871, 7TOR|1|A18S|G|873, 7TOR|1|A18S|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOR|1|A18S|A|685
7TOR|1|A18S|U|686
7TOR|1|A18S|C|687
7TOR|1|A18S|U|688
7TOR|1|A18S|U|689
7TOR|1|A18S|G|690
*
7TOR|1|A18S|C|736
7TOR|1|A18S|U|743
7TOR|1|A18S|G|744
*
7TOR|1|A18S|C|797
7TOR|1|A18S|G|798
7TOR|1|A18S|U|799
7TOR|1|A18S|U|800
*
7TOR|1|A18S|A|865
7TOR|1|A18S|U|866
7TOR|1|A18S|G|867
7TOR|1|A18S|G|868
7TOR|1|A18S|A|869
7TOR|1|A18S|A|870
7TOR|1|A18S|U|871
7TOR|1|A18S|A|872
7TOR|1|A18S|G|873
7TOR|1|A18S|G|874
*
7TOR|1|A18S|C|912
7TOR|1|A18S|A|913
7TOR|1|A18S|U|914
7TOR|1|A18S|G|915
7TOR|1|A18S|A|916
7TOR|1|A18S|U|917
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AL19
- 60S ribosomal protein L19
- Chain AS04
- 40S ribosomal protein S4
- Chain AS07
- eS7
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
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