J5_7TOR_007

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCUCUCC*GCCGGG*CCACGCGUCCAGCGCACGGGG

Length

51 nucleotides

Bulged bases

7TOR|1|A28S|G|959, 7TOR|1|A28S|C|972, 7TOR|1|A28S|C|1237, 7TOR|1|A28S|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|712
7TOR|1|A28S|C|713
*
7TOR|1|A28S|G|955
7TOR|1|A28S|A|956
7TOR|1|A28S|G|957
7TOR|1|A28S|G|958
7TOR|1|A28S|G|959
7TOR|1|A28S|A|960
7TOR|1|A28S|G|961
*
7TOR|1|A28S|U|971
7TOR|1|A28S|G|971|||A
7TOR|1|A28S|C|972
7TOR|1|A28S|G|973
7TOR|1|A28S|C|974
7TOR|1|A28S|C|975
7TOR|1|A28S|G|976
7TOR|1|A28S|C|977
7TOR|1|A28S|G|978
7TOR|1|A28S|C|979
7TOR|1|A28S|U|980
7TOR|1|A28S|C|981
7TOR|1|A28S|U|982
7TOR|1|A28S|C|983
7TOR|1|A28S|C|984
*
7TOR|1|A28S|G|1070
7TOR|1|A28S|C|1071
7TOR|1|A28S|C|1072
7TOR|1|A28S|G|1073
7TOR|1|A28S|G|1074
7TOR|1|A28S|G|1075
*
7TOR|1|A28S|C|1236
7TOR|1|A28S|C|1237
7TOR|1|A28S|A|1238
7TOR|1|A28S|C|1239
7TOR|1|A28S|G|1244
7TOR|1|A28S|C|1245
7TOR|1|A28S|G|1246
7TOR|1|A28S|U|1247
7TOR|1|A28S|C|1248
7TOR|1|A28S|C|1249
7TOR|1|A28S|A|1274
7TOR|1|A28S|G|1275
7TOR|1|A28S|C|1276
7TOR|1|A28S|G|1277
7TOR|1|A28S|C|1278
7TOR|1|A28S|A|1279
7TOR|1|A28S|C|1280
7TOR|1|A28S|G|1281
7TOR|1|A28S|G|1282
7TOR|1|A28S|G|1283
7TOR|1|A28S|G|1284

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7

Chain AL29

eL29

Chain AL32

60S ribosomal protein L32