J5_7TOR_009

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

7TOR|1|A28S|G|3620, 7TOR|1|A28S|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7TOR_009 not in the Motif Atlas

Homologous match to J5_8C3A_004

Geometric discrepancy: 0.1181

The information below is about J5_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|G|2855
7TOR|1|A28S|C|2856
7TOR|1|A28S|A|2857
7TOR|1|A28S|A|2858
7TOR|1|A28S|G|2859
7TOR|1|A28S|C|2860
7TOR|1|A28S|C|2861
7TOR|1|A28S|G|2862
7TOR|1|A28S|G|2863
*
7TOR|1|A28S|U|2887
7TOR|1|A28S|G|2888
*
7TOR|1|A28S|U|3613
7TOR|1|A28S|G|3614
*
7TOR|1|A28S|C|3618
7TOR|1|A28S|G|3619
7TOR|1|A28S|G|3620
7TOR|1|A28S|A|3621
7TOR|1|A28S|C|3622
7TOR|1|A28S|C|3623
7TOR|1|A28S|A|3624
7TOR|1|A28S|G|3625
7TOR|1|A28S|G|3626
*
7TOR|1|A28S|C|3835
7TOR|1|A28S|A|3836
7TOR|1|A28S|C|3837

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL19

60S ribosomal protein L19

Chain AL23

60S ribosomal protein L23

Chain AL24

Ribosomal protein L24

Chain GR2

GR20, ALS/FTD dipeptide repeat protein