J5_7TOR_010
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7TOR|1|A28S|A|3908, 7TOR|1|A28S|A|4394, 7TOR|1|A28S|U|4395, 7TOR|1|A28S|U|4450, 7TOR|1|A28S|G|4451, 7TOR|1|A28S|U|4555, 7TOR|1|A28S|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOR|1|A28S|A|3903
7TOR|1|A28S|G|3904
7TOR|1|A28S|A|3905
7TOR|1|A28S|A|3906
7TOR|1|A28S|G|3907
7TOR|1|A28S|A|3908
7TOR|1|A28S|C|3909
7TOR|1|A28S|C|3910
*
7TOR|1|A28S|G|4392
7TOR|1|A28S|G|4393
7TOR|1|A28S|A|4394
7TOR|1|A28S|U|4395
7TOR|1|A28S|A|4396
7TOR|1|A28S|A|4397
7TOR|1|A28S|C|4398
7TOR|1|A28S|U|4399
7TOR|1|A28S|G|4400
*
7TOR|1|A28S|C|4444
7TOR|1|A28S|U|4445
7TOR|1|A28S|U|4446
7TOR|1|A28S|C|4447
7TOR|1|A28S|G|4448
7TOR|1|A28S|A|4449
7TOR|1|A28S|U|4450
7TOR|1|A28S|G|4451
7TOR|1|A28S|U|4452
7TOR|1|A28S|C|4453
*
7TOR|1|A28S|G|4528
7TOR|1|A28S|G|4529
7TOR|1|A28S|U|4530
7TOR|1|A28S|U|4531
7TOR|1|A28S|U|4532
7TOR|1|A28S|A|4533
7TOR|1|A28S|G|4534
*
7TOR|1|A28S|U|4552
7TOR|1|A28S|A|4553
7TOR|1|A28S|G|4554
7TOR|1|A28S|U|4555
7TOR|1|A28S|U|4556
7TOR|1|A28S|U|4557
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL03
- 60S ribosomal protein L3
- Chain AL04
- 60S ribosomal protein L4
- Chain AL10
- Ribosomal protein L10
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL29
- eL29
- Chain GR1
- GR20, ALS/FTD dipeptide repeat protein
Coloring options: