J5_7TOR_011
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7TOR|1|A28S|G|3922, 7TOR|1|A28S|A|4376, 7TOR|1|A28S|G|4377, 7TOR|1|A28S|A|4378, 7TOR|1|A28S|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TOR_011 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3131
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7TOR|1|A28S|U|3920
7TOR|1|A28S|U|3921
7TOR|1|A28S|G|3922
7TOR|1|A28S|A|3923
*
7TOR|1|A28S|U|4188
7TOR|1|A28S|U|4189
7TOR|1|A28S|U|4190
7TOR|1|A28S|G|4191
*
7TOR|1|A28S|C|4204
7TOR|1|A28S|A|4205
*
7TOR|1|A28S|U|4227
7TOR|1|A28S|G|4228
*
7TOR|1|A28S|C|4375
7TOR|1|A28S|A|4376
7TOR|1|A28S|G|4377
7TOR|1|A28S|A|4378
7TOR|1|A28S|A|4379
7TOR|1|A28S|A|4380
7TOR|1|A28S|A|4381
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL18
- eL18
- Chain AL21
- 60S ribosomal protein L21
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL29
- eL29
- Chain AL42
- eL42
- Chain ETRN
- Transfer RNA; tRNA
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