J5_7TQL_002

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

39 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TQL|1|2|C|30
7TQL|1|2|U|31
7TQL|1|2|U|32
7TQL|1|2|G|33
7TQL|1|2|U|34
7TQL|1|2|C|35
7TQL|1|2|U|36
*
7TQL|1|2|A|519
7TQL|1|2|A|520
7TQL|1|2|A|521
7TQL|1|2|A|522
7TQL|1|2|A|523
7TQL|1|2|U|524
7TQL|1|2|A|525
7TQL|1|2|A|526
7TQL|1|2|C|527
*
7TQL|1|2|G|558
7TQL|1|2|G|559
7TQL|1|2|A|560
7TQL|1|2|A|561
7TQL|1|2|U|562
7TQL|1|2|G|563
7TQL|1|2|A|564
7TQL|1|2|G|565
*
7TQL|1|2|C|585
7TQL|1|2|G|586
7TQL|1|2|A|587
7TQL|1|2|G|588
7TQL|1|2|G|589
7TQL|1|2|A|590
7TQL|1|2|U|591
7TQL|1|2|C|592
7TQL|1|2|C|593
7TQL|1|2|A|594
7TQL|1|2|U|595
*
7TQL|1|2|A|641
7TQL|1|2|U|642
7TQL|1|2|A|643
7TQL|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 5B

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

ribosomal protein eS30