J5_7TUT_003
3D structure
- PDB id
- 7TUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7TUT|1|K|G|3620, 7TUT|1|K|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7TUT_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1206
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TUT|1|K|G|2855
7TUT|1|K|C|2856
7TUT|1|K|A|2857
7TUT|1|K|A|2858
7TUT|1|K|G|2859
7TUT|1|K|C|2860
7TUT|1|K|C|2861
7TUT|1|K|G|2862
7TUT|1|K|G|2863
*
7TUT|1|K|U|2887
7TUT|1|K|G|2888
*
7TUT|1|K|U|3613
7TUT|1|K|G|3614
*
7TUT|1|K|C|3618
7TUT|1|K|G|3619
7TUT|1|K|G|3620
7TUT|1|K|A|3621
7TUT|1|K|C|3622
7TUT|1|K|C|3623
7TUT|1|K|A|3624
7TUT|1|K|G|3625
7TUT|1|K|G|3626
*
7TUT|1|K|C|3835
7TUT|1|K|A|3836
7TUT|1|K|C|3837
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain V
- Ribosomal protein L23
- Chain W
- 60S ribosomal protein L24
- Chain w
- uL3
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