J5_7U0H_001
3D structure
- PDB id
- 7U0H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7U0H|1|2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7U0H_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0508
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7U0H|1|1|A|20
7U0H|1|1|G|21
7U0H|1|1|G|22
*
7U0H|1|2|C|35
7U0H|1|2|G|36
7U0H|1|2|A|37
7U0H|1|2|U|38
7U0H|1|2|G|39
7U0H|1|2|A|40
7U0H|1|2|A|41
7U0H|1|2|G|42
*
7U0H|1|2|U|102
7U0H|1|2|G|103
7U0H|1|2|A|104
7U0H|1|2|A|105
7U0H|1|2|C|106
7U0H|1|2|G|107
*
7U0H|1|2|C|115
7U0H|1|2|G|116
*
7U0H|1|2|C|137
7U0H|1|2|A|138
7U0H|1|2|U|139
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain n
- Pescadillo homolog
Coloring options: