J5_7UCJ_003
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7UCJ|1|5|G|3620, 7UCJ|1|5|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UCJ_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1198
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7UCJ|1|5|G|2855
7UCJ|1|5|C|2856
7UCJ|1|5|A|2857
7UCJ|1|5|A|2858
7UCJ|1|5|G|2859
7UCJ|1|5|C|2860
7UCJ|1|5|OMC|2861
7UCJ|1|5|G|2862
7UCJ|1|5|G|2863
*
7UCJ|1|5|U|2887
7UCJ|1|5|G|2888
*
7UCJ|1|5|U|3613
7UCJ|1|5|G|3614
*
7UCJ|1|5|C|3618
7UCJ|1|5|G|3619
7UCJ|1|5|G|3620
7UCJ|1|5|A|3621
7UCJ|1|5|C|3622
7UCJ|1|5|C|3623
7UCJ|1|5|A|3624
7UCJ|1|5|G|3625
7UCJ|1|5|G|3626
*
7UCJ|1|5|C|3835
7UCJ|1|5|A|3836
7UCJ|1|5|C|3837
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L19
- Chain V
- 60S ribosomal protein L23
- Chain W
- Ribosomal protein L24
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