J5_7UCJ_004
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7UCJ|1|5|A|3908, 7UCJ|1|5|A|4394, 7UCJ|1|5|PSU|4450, 7UCJ|1|5|G|4451, 7UCJ|1|5|U|4555, 7UCJ|1|5|U|4556
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UCJ|1|5|A|3903
7UCJ|1|5|G|3904
7UCJ|1|5|A|3905
7UCJ|1|5|A|3906
7UCJ|1|5|G|3907
7UCJ|1|5|A|3908
7UCJ|1|5|OMC|3909
7UCJ|1|5|C|3910
*
7UCJ|1|5|G|4392
7UCJ|1|5|G|4393
7UCJ|1|5|A|4394
7UCJ|1|5|U|4395
7UCJ|1|5|A|4396
7UCJ|1|5|A|4397
7UCJ|1|5|C|4398
7UCJ|1|5|U|4399
7UCJ|1|5|G|4400
*
7UCJ|1|5|C|4444
7UCJ|1|5|U|4445
7UCJ|1|5|U|4446
7UCJ|1|5|5MC|4447
7UCJ|1|5|G|4448
7UCJ|1|5|A|4449
7UCJ|1|5|PSU|4450
7UCJ|1|5|G|4451
7UCJ|1|5|U|4452
7UCJ|1|5|C|4453
*
7UCJ|1|5|G|4528
7UCJ|1|5|B8W|4529
7UCJ|1|5|UR3|4530
7UCJ|1|5|PSU|4531
7UCJ|1|5|U|4532
7UCJ|1|5|A|4533
7UCJ|1|5|G|4534
*
7UCJ|1|5|U|4552
7UCJ|1|5|A|4553
7UCJ|1|5|G|4554
7UCJ|1|5|U|4555
7UCJ|1|5|U|4556
7UCJ|1|5|U|4557
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- 60S ribosomal protein L8
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
Coloring options: