J5_7UCJ_009

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7UCJ|1|9|G|126, 7UCJ|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCJ|1|9|G|123
7UCJ|1|9|U|124
7UCJ|1|9|C|125
7UCJ|1|9|G|126
7UCJ|1|9|C|127
7UCJ|1|9|U|128
7UCJ|1|9|C|129
*
7UCJ|1|9|G|183
7UCJ|1|9|G|184
7UCJ|1|9|G|185
*
7UCJ|1|9|U|214
7UCJ|1|9|G|215
*
7UCJ|1|9|C|310
7UCJ|1|9|C|311
7UCJ|1|9|G|312
*
7UCJ|1|9|C|337
7UCJ|1|9|G|338
7UCJ|1|9|A|339
7UCJ|1|9|C|340
7UCJ|1|9|C|341

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8