J5_7UCJ_010
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 7UCJ|1|9|C|687, 7UCJ|1|9|U|871, 7UCJ|1|9|G|873, 7UCJ|1|9|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UCJ|1|9|A|685
7UCJ|1|9|U|686
7UCJ|1|9|C|687
7UCJ|1|9|U|688
7UCJ|1|9|U|689
7UCJ|1|9|G|690
*
7UCJ|1|9|C|736
7UCJ|1|9|U|743
7UCJ|1|9|G|744
*
7UCJ|1|9|C|797
7UCJ|1|9|G|798
7UCJ|1|9|U|799
7UCJ|1|9|U|800
*
7UCJ|1|9|A|865
7UCJ|1|9|U|866
7UCJ|1|9|G|867
7UCJ|1|9|G|868
7UCJ|1|9|A|869
7UCJ|1|9|A|870
7UCJ|1|9|U|871
7UCJ|1|9|A|872
7UCJ|1|9|G|873
7UCJ|1|9|G|874
*
7UCJ|1|9|C|912
7UCJ|1|9|A|913
7UCJ|1|9|U|914
7UCJ|1|9|G|915
7UCJ|1|9|A|916
7UCJ|1|9|U|917
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain HH
- 40S ribosomal protein S7
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- 40S ribosomal protein S13
- Chain R
- 60S ribosomal protein L19
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
Coloring options: