J5_7UCK_002
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 7UCK|1|5|C|2289, 7UCK|1|5|U|2350
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UCK_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.078
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7UCK|1|5|G|1335
7UCK|1|5|G|1336
7UCK|1|5|A|1337
7UCK|1|5|G|1338
7UCK|1|5|U|1339
7UCK|1|5|C|1340
*
7UCK|1|5|G|1516
7UCK|1|5|2MG|1517
7UCK|1|5|A|1518
7UCK|1|5|C|1519
*
7UCK|1|5|G|1658
7UCK|1|5|I4U|1659
7UCK|1|5|U|1660
7UCK|1|5|C|1661
*
7UCK|1|5|G|2288
7UCK|1|5|C|2289
7UCK|1|5|C|2290
*
7UCK|1|5|G|2345
7UCK|1|5|C|2346
7UCK|1|5|A|2347
7UCK|1|5|G|2348
7UCK|1|5|A|2349
7UCK|1|5|U|2350
7UCK|1|5|C|2351
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain e
- 60S ribosomal protein L32
- Chain r
- 60S ribosomal protein L28
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