J5_7UCK_009

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7UCK|1|9|G|126, 7UCK|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCK|1|9|G|123
7UCK|1|9|U|124
7UCK|1|9|C|125
7UCK|1|9|G|126
7UCK|1|9|C|127
7UCK|1|9|U|128
7UCK|1|9|C|129
*
7UCK|1|9|G|183
7UCK|1|9|G|184
7UCK|1|9|G|185
*
7UCK|1|9|U|214
7UCK|1|9|G|215
*
7UCK|1|9|C|310
7UCK|1|9|C|311
7UCK|1|9|G|312
*
7UCK|1|9|C|337
7UCK|1|9|G|338
7UCK|1|9|A|339
7UCK|1|9|C|340
7UCK|1|9|C|341

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8