J5_7UG6_005
3D structure
- PDB id
- 7UG6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUGGCUUGUGG*CUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUU
- Length
- 61 nucleotides
- Bulged bases
- 7UG6|1|1|A|2402, 7UG6|1|1|U|2818, 7UG6|1|1|C|2821, 7UG6|1|1|G|2824, 7UG6|1|1|C|2825, 7UG6|1|1|G|2828, 7UG6|1|1|U|2829, 7UG6|1|1|U|2860, 7UG6|1|1|U|2861, 7UG6|1|1|U|2862, 7UG6|1|1|G|2863, 7UG6|1|1|C|2870, 7UG6|1|1|G|2871, 7UG6|1|1|U|2873, 7UG6|1|1|U|2875, 7UG6|1|1|U|2954, 7UG6|1|1|U|2955, 7UG6|1|1|A|2956, 7UG6|1|1|U|2978, 7UG6|1|1|U|2979, 7UG6|1|1|U|2980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UG6|1|1|A|2398
7UG6|1|1|A|2399
7UG6|1|1|G|2400
7UG6|1|1|A|2401
7UG6|1|1|A|2402
7UG6|1|1|G|2403
7UG6|1|1|A|2404
7UG6|1|1|C|2405
7UG6|1|1|C|2406
*
7UG6|1|1|G|2815
7UG6|1|1|G|2816
7UG6|1|1|A|2817
7UG6|1|1|U|2818
7UG6|1|1|A|2819
7UG6|1|1|A|2820
7UG6|1|1|C|2821
7UG6|1|1|U|2822
7UG6|1|1|G|2823
7UG6|1|1|G|2824
7UG6|1|1|C|2825
7UG6|1|1|U|2826
7UG6|1|1|U|2827
7UG6|1|1|G|2828
7UG6|1|1|U|2829
7UG6|1|1|G|2830
7UG6|1|1|G|2831
*
7UG6|1|1|C|2857
7UG6|1|1|U|2858
7UG6|1|1|U|2859
7UG6|1|1|U|2860
7UG6|1|1|U|2861
7UG6|1|1|U|2862
7UG6|1|1|G|2863
7UG6|1|1|A|2864
7UG6|1|1|U|2865
7UG6|1|1|U|2866
7UG6|1|1|C|2867
7UG6|1|1|U|2868
7UG6|1|1|U|2869
7UG6|1|1|C|2870
7UG6|1|1|G|2871
7UG6|1|1|A|2872
7UG6|1|1|U|2873
7UG6|1|1|G|2874
7UG6|1|1|U|2875
7UG6|1|1|C|2876
*
7UG6|1|1|G|2950
7UG6|1|1|G|2951
7UG6|1|1|G|2952
7UG6|1|1|U|2953
7UG6|1|1|U|2954
7UG6|1|1|U|2955
7UG6|1|1|A|2956
7UG6|1|1|G|2957
*
7UG6|1|1|U|2975
7UG6|1|1|A|2976
7UG6|1|1|G|2977
7UG6|1|1|U|2978
7UG6|1|1|U|2979
7UG6|1|1|U|2980
7UG6|1|1|U|2981
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain x
- Ribosome assembly protein 4
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