J5_7UG7_003
3D structure
- PDB id
- 7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7UG7|1|16|A|60, 7UG7|1|16|A|109, 7UG7|1|16|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UG7_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1026
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UG7|1|16|C|58
7UG7|1|16|A|59
7UG7|1|16|A|60
7UG7|1|16|G|61
*
7UG7|1|16|C|106
7UG7|1|16|G|107
7UG7|1|16|G|108
7UG7|1|16|A|109
7UG7|1|16|C|110
7UG7|1|16|G|111
7UG7|1|16|G|112
7UG7|1|16|G|113
*
7UG7|1|16|C|314
7UG7|1|16|A|315
7UG7|1|16|C|316
*
7UG7|1|16|G|337
7UG7|1|16|A|338
7UG7|1|16|C|339
*
7UG7|1|16|G|350
7UG7|1|16|G|351
7UG7|1|16|C|352
7UG7|1|16|A|353
7UG7|1|16|G|354
Current chains
- Chain 16
- 16S rRNA
Nearby chains
- Chain LN
- 50S ribosomal protein L14
- Chain LS
- 50S ribosomal protein L19
- Chain SP
- 30S ribosomal protein S16
- Chain ST
- 30S ribosomal protein S20
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