J5_7UG7_004

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UG7|1|23|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UG7_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0489

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UG7|1|23|C|47
7UG7|1|23|G|48
7UG7|1|23|A|49
7UG7|1|23|U|50
7UG7|1|23|G|51
7UG7|1|23|A|52
7UG7|1|23|A|53
7UG7|1|23|G|54
*
7UG7|1|23|C|116
7UG7|1|23|G|117
7UG7|1|23|A|118
7UG7|1|23|A|119
7UG7|1|23|U|120
7UG7|1|23|G|121
*
7UG7|1|23|C|130
7UG7|1|23|A|131
*
7UG7|1|23|U|148
7UG7|1|23|A|149
7UG7|1|23|U|150
*
7UG7|1|23|A|176
7UG7|1|23|G|177
7UG7|1|23|G|178

Current chains

Chain 23

23S rRNA

Nearby chains

Chain Lh

50S ribosomal protein L34