J5_7UNW_001

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UNW|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UNW_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0595

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UNW|1|A|C|47
7UNW|1|A|G|48
7UNW|1|A|A|49
7UNW|1|A|U|50
7UNW|1|A|G|51
7UNW|1|A|A|52
7UNW|1|A|A|53
7UNW|1|A|A|54
*
7UNW|1|A|U|116
7UNW|1|A|G|117
7UNW|1|A|A|118
7UNW|1|A|A|119
7UNW|1|A|U|120
7UNW|1|A|G|121
*
7UNW|1|A|C|130
7UNW|1|A|A|131
*
7UNW|1|A|U|148
7UNW|1|A|A|149
7UNW|1|A|U|150
*
7UNW|1|A|A|176
7UNW|1|A|G|177
7UNW|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34