J5_7UQB_002
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 7UQB|1|1|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7UQB_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0568
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7UQB|1|1|G|658
7UQB|1|1|G|659
7UQB|1|1|A|660
7UQB|1|1|G|661
7UQB|1|1|U|662
7UQB|1|1|OMC|663
*
7UQB|1|1|G|799
7UQB|1|1|G|800
7UQB|1|1|A|801
7UQB|1|1|C|802
*
7UQB|1|1|G|941
7UQB|1|1|U|942
7UQB|1|1|U|943
7UQB|1|1|C|944
*
7UQB|1|1|G|1375
7UQB|1|1|C|1376
*
7UQB|1|1|G|1431
7UQB|1|1|C|1432
7UQB|1|1|A|1433
7UQB|1|1|G|1434
7UQB|1|1|A|1435
7UQB|1|1|U|1436
7UQB|1|1|OMC|1437
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain e
- 60S ribosomal protein L32
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