3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
Length
23 nucleotides
Bulged bases
7UQZ|1|1|U|1436
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7UQZ_002 not in the Motif Atlas
Homologous match to J5_8P9A_011
Geometric discrepancy: 0.0639
The information below is about J5_8P9A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_63811.1
Basepair signature
cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

7UQZ|1|1|G|658
7UQZ|1|1|G|659
7UQZ|1|1|A|660
7UQZ|1|1|G|661
7UQZ|1|1|U|662
7UQZ|1|1|OMC|663
*
7UQZ|1|1|G|799
7UQZ|1|1|G|800
7UQZ|1|1|A|801
7UQZ|1|1|C|802
*
7UQZ|1|1|G|941
7UQZ|1|1|U|942
7UQZ|1|1|U|943
7UQZ|1|1|C|944
*
7UQZ|1|1|G|1375
7UQZ|1|1|C|1376
*
7UQZ|1|1|G|1431
7UQZ|1|1|C|1432
7UQZ|1|1|A|1433
7UQZ|1|1|G|1434
7UQZ|1|1|A|1435
7UQZ|1|1|U|1436
7UQZ|1|1|OMC|1437

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain b
Nucleolar GTP-binding protein 1
Chain e
60S ribosomal protein L32

Coloring options:


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