3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CGGCACA*UGUCCUAAG*UUGAUU*AC*GG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7UQZ|1|1|C|2622
7UQZ|1|1|G|2623
7UQZ|1|1|G|2624
7UQZ|1|1|C|2625
7UQZ|1|1|A|2626
7UQZ|1|1|C|2627
7UQZ|1|1|A|2628
*
7UQZ|1|1|U|2650
7UQZ|1|1|G|2651
7UQZ|1|1|U|2652
7UQZ|1|1|C|2653
7UQZ|1|1|C|2654
7UQZ|1|1|U|2655
7UQZ|1|1|A|2656
7UQZ|1|1|A|2657
7UQZ|1|1|G|2658
*
7UQZ|1|1|U|2712
7UQZ|1|1|U|2713
7UQZ|1|1|G|2714
7UQZ|1|1|A|2715
7UQZ|1|1|U|2716
7UQZ|1|1|U|2717
*
7UQZ|1|1|A|2740
7UQZ|1|1|C|2741
*
7UQZ|1|1|G|2753
7UQZ|1|1|G|2754

Current chains

Chain 1
25S rRNA

Nearby chains

Chain D
60S ribosomal protein L5
Chain J
60S ribosomal protein L11-A
Chain T
60S ribosomal protein L21-A
Chain m
Nucleolar GTP-binding protein 2
Chain r
Ribosome biogenesis protein NSA2
Chain v
Ribosome production factor 2 homolog
Chain w
Ribosome biogenesis regulatory protein
Chain x
RSA4 isoform 1

Coloring options:

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