J5_7UVW_001

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UVW|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVW_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0891

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UVW|1|A|C|54
7UVW|1|A|G|55
7UVW|1|A|A|56
7UVW|1|A|U|57
7UVW|1|A|G|58
7UVW|1|A|A|59
7UVW|1|A|A|60
7UVW|1|A|A|61
*
7UVW|1|A|U|123
7UVW|1|A|G|124
7UVW|1|A|A|125
7UVW|1|A|A|126
7UVW|1|A|U|127
7UVW|1|A|G|128
*
7UVW|1|A|C|137
7UVW|1|A|A|138
*
7UVW|1|A|U|155
7UVW|1|A|A|156
7UVW|1|A|U|157
*
7UVW|1|A|A|183
7UVW|1|A|G|184
7UVW|1|A|G|185

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34