J5_7UVY_001

3D structure

PDB id

7UVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UVY|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVY_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0769

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UVY|1|A|C|54
7UVY|1|A|G|55
7UVY|1|A|A|56
7UVY|1|A|U|57
7UVY|1|A|G|58
7UVY|1|A|A|59
7UVY|1|A|A|60
7UVY|1|A|A|61
*
7UVY|1|A|U|123
7UVY|1|A|G|124
7UVY|1|A|A|125
7UVY|1|A|A|126
7UVY|1|A|U|127
7UVY|1|A|G|128
*
7UVY|1|A|C|137
7UVY|1|A|A|138
*
7UVY|1|A|U|155
7UVY|1|A|A|156
7UVY|1|A|U|157
*
7UVY|1|A|A|183
7UVY|1|A|G|184
7UVY|1|A|G|185

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34