J5_7UVZ_001

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7UVZ|1|A|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7UVZ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0758

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7UVZ|1|A|C|54
7UVZ|1|A|G|55
7UVZ|1|A|A|56
7UVZ|1|A|U|57
7UVZ|1|A|G|58
7UVZ|1|A|A|59
7UVZ|1|A|A|60
7UVZ|1|A|A|61
*
7UVZ|1|A|U|123
7UVZ|1|A|G|124
7UVZ|1|A|A|125
7UVZ|1|A|A|126
7UVZ|1|A|U|127
7UVZ|1|A|G|128
*
7UVZ|1|A|C|137
7UVZ|1|A|A|138
*
7UVZ|1|A|U|155
7UVZ|1|A|A|156
7UVZ|1|A|U|157
*
7UVZ|1|A|A|183
7UVZ|1|A|G|184
7UVZ|1|A|G|185

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34