J5_7V2N_002

3D structure

PDB id

7V2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

7V2N|1|A|A|61, 7V2N|1|A|A|103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7V2N|1|A|G|58
7V2N|1|A|C|59
7V2N|1|A|A|60
7V2N|1|A|A|61
7V2N|1|A|G|62
*
7V2N|1|A|C|100
7V2N|1|A|G|101
7V2N|1|A|G|102
7V2N|1|A|A|103
7V2N|1|A|C|104
7V2N|1|A|G|105
7V2N|1|A|G|106
7V2N|1|A|G|107
*
7V2N|1|A|C|310
7V2N|1|A|A|311
7V2N|1|A|G|312
*
7V2N|1|A|C|333
7V2N|1|A|A|334
7V2N|1|A|C|335
*
7V2N|1|A|G|346
7V2N|1|A|G|347
7V2N|1|A|C|348
7V2N|1|A|A|349
7V2N|1|A|G|350
7V2N|1|A|C|351

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20