J5_7WTL_004

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

7WTL|1|C2|U|639, 7WTL|1|C2|U|694, 7WTL|1|C2|C|696, 7WTL|1|C2|C|697, 7WTL|1|C2|U|742, 7WTL|1|C2|U|813, 7WTL|1|C2|G|815, 7WTL|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTL|1|C2|A|636
7WTL|1|C2|C|637
7WTL|1|C2|U|638
7WTL|1|C2|U|639
7WTL|1|C2|U|640
7WTL|1|C2|G|641
*
7WTL|1|C2|U|693
7WTL|1|C2|U|694
7WTL|1|C2|U|695
7WTL|1|C2|C|696
7WTL|1|C2|C|697
7WTL|1|C2|U|698
7WTL|1|C2|U|699
*
7WTL|1|C2|G|739
7WTL|1|C2|A|740
7WTL|1|C2|C|741
7WTL|1|C2|U|742
7WTL|1|C2|U|743
7WTL|1|C2|U|744
*
7WTL|1|C2|A|807
7WTL|1|C2|U|808
7WTL|1|C2|A|809
7WTL|1|C2|G|810
7WTL|1|C2|A|811
7WTL|1|C2|A|812
7WTL|1|C2|U|813
7WTL|1|C2|A|814
7WTL|1|C2|G|815
7WTL|1|C2|G|816
7WTL|1|C2|A|817
*
7WTL|1|C2|U|854
7WTL|1|C2|A|855
7WTL|1|C2|A|856
7WTL|1|C2|U|857
7WTL|1|C2|G|858
7WTL|1|C2|A|859
7WTL|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A