J5_7WTN_003

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

7WTN|1|C2|U|639, 7WTN|1|C2|U|694, 7WTN|1|C2|C|696, 7WTN|1|C2|U|742, 7WTN|1|C2|U|813, 7WTN|1|C2|G|815, 7WTN|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTN|1|C2|A|636
7WTN|1|C2|C|637
7WTN|1|C2|U|638
7WTN|1|C2|U|639
7WTN|1|C2|U|640
7WTN|1|C2|G|641
*
7WTN|1|C2|U|693
7WTN|1|C2|U|694
7WTN|1|C2|U|695
7WTN|1|C2|C|696
7WTN|1|C2|C|697
7WTN|1|C2|U|698
7WTN|1|C2|U|699
*
7WTN|1|C2|G|739
7WTN|1|C2|A|740
7WTN|1|C2|C|741
7WTN|1|C2|U|742
7WTN|1|C2|U|743
7WTN|1|C2|U|744
*
7WTN|1|C2|A|807
7WTN|1|C2|U|808
7WTN|1|C2|A|809
7WTN|1|C2|G|810
7WTN|1|C2|A|811
7WTN|1|C2|A|812
7WTN|1|C2|U|813
7WTN|1|C2|A|814
7WTN|1|C2|G|815
7WTN|1|C2|G|816
7WTN|1|C2|A|817
*
7WTN|1|C2|U|854
7WTN|1|C2|A|855
7WTN|1|C2|A|856
7WTN|1|C2|U|857
7WTN|1|C2|G|858
7WTN|1|C2|A|859
7WTN|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A