J5_7WTO_003
3D structure
- PDB id
- 7WTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 7WTO|1|C2|U|639, 7WTO|1|C2|U|694, 7WTO|1|C2|C|696, 7WTO|1|C2|U|742, 7WTO|1|C2|U|813, 7WTO|1|C2|G|815, 7WTO|1|C2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7WTO|1|C2|A|636
7WTO|1|C2|C|637
7WTO|1|C2|U|638
7WTO|1|C2|U|639
7WTO|1|C2|U|640
7WTO|1|C2|G|641
*
7WTO|1|C2|U|693
7WTO|1|C2|U|694
7WTO|1|C2|U|695
7WTO|1|C2|C|696
7WTO|1|C2|C|697
7WTO|1|C2|U|698
*
7WTO|1|C2|A|740
7WTO|1|C2|C|741
7WTO|1|C2|U|742
7WTO|1|C2|U|743
7WTO|1|C2|U|744
*
7WTO|1|C2|A|807
7WTO|1|C2|U|808
7WTO|1|C2|A|809
7WTO|1|C2|G|810
7WTO|1|C2|A|811
7WTO|1|C2|A|812
7WTO|1|C2|U|813
7WTO|1|C2|A|814
7WTO|1|C2|G|815
7WTO|1|C2|G|816
7WTO|1|C2|A|817
*
7WTO|1|C2|U|854
7WTO|1|C2|A|855
7WTO|1|C2|A|856
7WTO|1|C2|U|857
7WTO|1|C2|G|858
7WTO|1|C2|A|859
7WTO|1|C2|U|860
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4-A
- Chain SH
- 40S ribosomal protein S7-A
- Chain SL
- 40S ribosomal protein S11-A
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
Coloring options: