J5_7WTQ_003

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

7WTQ|1|C2|U|639, 7WTQ|1|C2|U|694, 7WTQ|1|C2|C|696, 7WTQ|1|C2|U|742, 7WTQ|1|C2|U|813, 7WTQ|1|C2|G|815, 7WTQ|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTQ|1|C2|A|636
7WTQ|1|C2|C|637
7WTQ|1|C2|U|638
7WTQ|1|C2|U|639
7WTQ|1|C2|U|640
7WTQ|1|C2|G|641
*
7WTQ|1|C2|U|693
7WTQ|1|C2|U|694
7WTQ|1|C2|U|695
7WTQ|1|C2|C|696
7WTQ|1|C2|C|697
7WTQ|1|C2|U|698
*
7WTQ|1|C2|A|740
7WTQ|1|C2|C|741
7WTQ|1|C2|U|742
7WTQ|1|C2|U|743
7WTQ|1|C2|U|744
*
7WTQ|1|C2|A|807
7WTQ|1|C2|U|808
7WTQ|1|C2|A|809
7WTQ|1|C2|G|810
7WTQ|1|C2|A|811
7WTQ|1|C2|A|812
7WTQ|1|C2|U|813
7WTQ|1|C2|A|814
7WTQ|1|C2|G|815
7WTQ|1|C2|G|816
7WTQ|1|C2|A|817
*
7WTQ|1|C2|U|854
7WTQ|1|C2|A|855
7WTQ|1|C2|A|856
7WTQ|1|C2|U|857
7WTQ|1|C2|G|858
7WTQ|1|C2|A|859
7WTQ|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A