J5_7WTT_002

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTT|1|2|C|30
7WTT|1|2|U|31
7WTT|1|2|U|32
7WTT|1|2|G|33
7WTT|1|2|U|34
*
7WTT|1|2|A|521
7WTT|1|2|A|522
7WTT|1|2|A|523
7WTT|1|2|U|524
7WTT|1|2|A|525
7WTT|1|2|A|526
7WTT|1|2|C|527
*
7WTT|1|2|G|558
7WTT|1|2|G|559
7WTT|1|2|A|560
7WTT|1|2|A|561
7WTT|1|2|U|562
7WTT|1|2|G|563
7WTT|1|2|A|564
7WTT|1|2|G|565
*
7WTT|1|2|C|585
7WTT|1|2|G|586
7WTT|1|2|A|587
7WTT|1|2|G|588
7WTT|1|2|G|589
7WTT|1|2|A|590
7WTT|1|2|U|591
7WTT|1|2|C|592
7WTT|1|2|C|593
7WTT|1|2|A|594
7WTT|1|2|U|595
*
7WTT|1|2|A|641
7WTT|1|2|U|642
7WTT|1|2|A|643
7WTT|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog