J5_7WTW_002

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTW|1|2|C|30
7WTW|1|2|U|31
7WTW|1|2|U|32
7WTW|1|2|G|33
7WTW|1|2|U|34
*
7WTW|1|2|A|521
7WTW|1|2|A|522
7WTW|1|2|A|523
7WTW|1|2|U|524
7WTW|1|2|A|525
7WTW|1|2|A|526
7WTW|1|2|C|527
*
7WTW|1|2|G|558
7WTW|1|2|G|559
7WTW|1|2|A|560
7WTW|1|2|A|561
7WTW|1|2|U|562
7WTW|1|2|G|563
7WTW|1|2|A|564
7WTW|1|2|G|565
*
7WTW|1|2|C|585
7WTW|1|2|G|586
7WTW|1|2|A|587
7WTW|1|2|G|588
7WTW|1|2|G|589
7WTW|1|2|A|590
7WTW|1|2|U|591
7WTW|1|2|C|592
7WTW|1|2|C|593
7WTW|1|2|A|594
7WTW|1|2|U|595
*
7WTW|1|2|A|641
7WTW|1|2|U|642
7WTW|1|2|A|643
7WTW|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog