J5_7WTX_002

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

7WTX|1|2|A|590, 7WTX|1|2|U|591, 7WTX|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTX|1|2|C|30
7WTX|1|2|U|31
7WTX|1|2|U|32
7WTX|1|2|G|33
7WTX|1|2|U|34
*
7WTX|1|2|A|521
7WTX|1|2|A|522
7WTX|1|2|A|523
7WTX|1|2|U|524
7WTX|1|2|A|525
7WTX|1|2|A|526
7WTX|1|2|C|527
*
7WTX|1|2|G|558
7WTX|1|2|G|559
7WTX|1|2|A|560
7WTX|1|2|A|561
7WTX|1|2|U|562
7WTX|1|2|G|563
7WTX|1|2|A|564
7WTX|1|2|G|565
*
7WTX|1|2|C|585
7WTX|1|2|G|586
7WTX|1|2|A|587
7WTX|1|2|G|588
7WTX|1|2|G|589
7WTX|1|2|A|590
7WTX|1|2|U|591
7WTX|1|2|C|592
7WTX|1|2|C|593
7WTX|1|2|A|594
7WTX|1|2|U|595
*
7WTX|1|2|A|641
7WTX|1|2|U|642
7WTX|1|2|A|643
7WTX|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog