J5_7WTX_004

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCUCG*CGGG*UG*CCG*CG

Length

17 nucleotides

Bulged bases

7WTX|1|2|G|126, 7WTX|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTX|1|2|C|125
7WTX|1|2|G|126
7WTX|1|2|C|127
7WTX|1|2|U|128
7WTX|1|2|C|129
7WTX|1|2|G|130
*
7WTX|1|2|C|182
7WTX|1|2|G|183
7WTX|1|2|G|184
7WTX|1|2|G|185
*
7WTX|1|2|U|214
7WTX|1|2|G|215
*
7WTX|1|2|C|310
7WTX|1|2|C|311
7WTX|1|2|G|312
*
7WTX|1|2|C|337
7WTX|1|2|G|338

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8