J5_7XAM_002

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

7XAM|1|A|U|318, 7XAM|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XAM|1|A|C|269
7XAM|1|A|U|270
7XAM|1|A|A|271
7XAM|1|A|A|272
7XAM|1|A|A|273
7XAM|1|A|C|274
*
7XAM|1|A|G|312
7XAM|1|A|G|313
7XAM|1|A|G|314
7XAM|1|A|U|315
7XAM|1|A|U|316
7XAM|1|A|G|317
7XAM|1|A|U|318
7XAM|1|A|G|319
*
7XAM|1|A|C|457
7XAM|1|A|G|458
7XAM|1|A|A|459
7XAM|1|A|G|460
7XAM|1|A|U|461
7XAM|1|A|A|462
7XAM|1|A|G|463
*
7XAM|1|A|U|487
7XAM|1|A|G|488
7XAM|1|A|A|489
7XAM|1|A|A|490
7XAM|1|A|U|491
7XAM|1|A|C|492
7XAM|1|A|U|493
7XAM|1|A|G|494
*
7XAM|1|A|U|509
7XAM|1|A|A|510
7XAM|1|A|A|511
7XAM|1|A|G|512

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28