J5_7XNX_010

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

7XNX|1|S2|G|126, 7XNX|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|S2|C|125
7XNX|1|S2|G|126
7XNX|1|S2|C|127
7XNX|1|S2|U|128
7XNX|1|S2|C|129
*
7XNX|1|S2|G|183
7XNX|1|S2|G|184
7XNX|1|S2|G|185
*
7XNX|1|S2|U|214
7XNX|1|S2|G|215
*
7XNX|1|S2|C|310
7XNX|1|S2|C|311
7XNX|1|S2|G|312
*
7XNX|1|S2|C|337
7XNX|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8