J5_7Y41_002

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

7Y41|1|A|U|318, 7Y41|1|A|U|491, 7Y41|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Y41|1|A|C|269
7Y41|1|A|U|270
7Y41|1|A|A|271
7Y41|1|A|A|272
7Y41|1|A|A|273
7Y41|1|A|C|274
*
7Y41|1|A|G|312
7Y41|1|A|G|313
7Y41|1|A|G|314
7Y41|1|A|U|315
7Y41|1|A|U|316
7Y41|1|A|G|317
7Y41|1|A|U|318
7Y41|1|A|G|319
*
7Y41|1|A|C|457
7Y41|1|A|G|458
7Y41|1|A|A|459
7Y41|1|A|G|460
7Y41|1|A|U|461
7Y41|1|A|A|462
7Y41|1|A|G|463
*
7Y41|1|A|U|487
7Y41|1|A|G|488
7Y41|1|A|A|489
7Y41|1|A|A|490
7Y41|1|A|U|491
7Y41|1|A|C|492
7Y41|1|A|U|493
7Y41|1|A|G|494
*
7Y41|1|A|U|509
7Y41|1|A|A|510
7Y41|1|A|A|511
7Y41|1|A|G|512

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L28