J5_7Y41_007

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU

Length

37 nucleotides

Bulged bases

7Y41|1|A|A|2286, 7Y41|1|A|A|2672, 7Y41|1|A|U|2673, 7Y41|1|A|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Y41|1|A|A|2281
7Y41|1|A|A|2282
7Y41|1|A|A|2283
7Y41|1|A|A|2284
7Y41|1|A|G|2285
7Y41|1|A|A|2286
7Y41|1|A|C|2287
7Y41|1|A|C|2288
*
7Y41|1|A|G|2670
7Y41|1|A|G|2671
7Y41|1|A|A|2672
7Y41|1|A|U|2673
7Y41|1|A|A|2674
7Y41|1|A|A|2675
7Y41|1|A|C|2676
7Y41|1|A|A|2677
*
7Y41|1|A|U|2724
7Y41|1|A|C|2725
7Y41|1|A|G|2726
7Y41|1|A|A|2727
7Y41|1|A|U|2728
7Y41|1|A|G|2729
7Y41|1|A|U|2730
7Y41|1|A|C|2731
*
7Y41|1|A|G|2806
7Y41|1|A|G|2807
7Y41|1|A|U|2808
7Y41|1|A|U|2809
7Y41|1|A|U|2810
7Y41|1|A|A|2811
7Y41|1|A|G|2812
*
7Y41|1|A|C|2830
7Y41|1|A|G|2831
7Y41|1|A|G|2832
7Y41|1|A|U|2833
7Y41|1|A|C|2834
7Y41|1|A|U|2835

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32