J5_7Y7F_002
3D structure
- PDB id
- 7Y7F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Y7F_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0573
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7Y7F|1|A|C|36
7Y7F|1|A|U|37
7Y7F|1|A|G|38
7Y7F|1|A|G|39
*
7Y7F|1|A|C|403
7Y7F|1|A|G|404
7Y7F|1|A|U|405
7Y7F|1|A|G|406
*
7Y7F|1|A|C|436
7Y7F|1|A|U|437
7Y7F|1|A|U|438
7Y7F|1|A|U|439
7Y7F|1|A|C|440
7Y7F|1|A|A|441
7Y7F|1|A|G|442
*
7Y7F|1|A|C|492
7Y7F|1|A|A|493
7Y7F|1|A|G|494
7Y7F|1|A|A|495
7Y7F|1|A|A|496
7Y7F|1|A|G|497
7Y7F|1|A|A|498
7Y7F|1|A|A|499
7Y7F|1|A|G|500
*
7Y7F|1|A|C|545
7Y7F|1|A|A|546
7Y7F|1|A|A|547
7Y7F|1|A|G|548
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: