J5_7Y7F_004

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7Y7F|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7Y7F_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0431

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7Y7F|1|a|C|47
7Y7F|1|a|G|48
7Y7F|1|a|A|49
7Y7F|1|a|U|50
7Y7F|1|a|G|51
7Y7F|1|a|A|52
7Y7F|1|a|A|53
7Y7F|1|a|G|54
*
7Y7F|1|a|C|116
7Y7F|1|a|G|117
7Y7F|1|a|A|118
7Y7F|1|a|A|119
7Y7F|1|a|U|120
7Y7F|1|a|G|121
*
7Y7F|1|a|C|130
7Y7F|1|a|A|131
*
7Y7F|1|a|U|148
7Y7F|1|a|A|149
7Y7F|1|a|U|150
*
7Y7F|1|a|A|176
7Y7F|1|a|G|177
7Y7F|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34