J5_7YLA_001

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7YLA|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7YLA_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0702

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|C|47
7YLA|1|I|G|48
7YLA|1|I|A|49
7YLA|1|I|U|50
7YLA|1|I|G|51
7YLA|1|I|A|52
7YLA|1|I|A|53
7YLA|1|I|G|54
*
7YLA|1|I|C|116
7YLA|1|I|G|117
7YLA|1|I|A|118
7YLA|1|I|A|119
7YLA|1|I|U|120
7YLA|1|I|G|121
*
7YLA|1|I|C|130
7YLA|1|I|A|131
*
7YLA|1|I|U|148
7YLA|1|I|A|149
7YLA|1|I|U|150
*
7YLA|1|I|A|176
7YLA|1|I|G|177
7YLA|1|I|G|178

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain k

50S ribosomal protein L34