J5_7ZAH_002

3D structure

PDB id

7ZAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAG*CGGACGGC*GAU*AGG*CGCAG

Length

23 nucleotides

Bulged bases

7ZAH|1|2|A|105, 7ZAH|1|2|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAH|1|2|C|66
7ZAH|1|2|G|67
7ZAH|1|2|A|68
7ZAH|1|2|G|69
*
7ZAH|1|2|C|102
7ZAH|1|2|G|103
7ZAH|1|2|G|104
7ZAH|1|2|A|105
7ZAH|1|2|C|106
7ZAH|1|2|G|107
7ZAH|1|2|G|108
7ZAH|1|2|C|109
*
7ZAH|1|2|G|323
7ZAH|1|2|A|324
7ZAH|1|2|U|325
*
7ZAH|1|2|A|346
7ZAH|1|2|G|347
7ZAH|1|2|G|348
*
7ZAH|1|2|C|359
7ZAH|1|2|G|360
7ZAH|1|2|C|361
7ZAH|1|2|A|362
7ZAH|1|2|G|363

Current chains

Chain 2

16S rRNA

Nearby chains

Chain 7

Translation initiation factor 5B

Chain E

30S ribosomal protein S4e

Chain G

30S ribosomal protein S6e

Chain J

30S ribosomal protein S8e